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Publications featuring ALICE

Publications featuring ALICE

Articles with acknowledgements to the use of ALICE

Please acknowledge the use of ALICE in your publications as outlined here: Acknowledging ALICE

Category

Title

Author

Journal

Year

Link

Category

Title

Author

Journal

Year

Link

Archeology

 

 

 

 

 

Archeology

Hunter-gatherer impact on European interglacial vegetation: A modelling approach

A. Nikulina et al.

Quaternary Science Reviews

2024

https://doi.org/10.1016/j.quascirev.2023.108439

Astronomy and Astrophysics

 

 

 

 

 

Astronomy and Astrophysics

Reducing false positives in strong lens detection through effective augmentation and ensemble learning

S. Rezaei et al.

MNRAS

2025

https://doi.org/10.1093/mnras/staf327

Astronomy and Astrophysics

KiDS-Legacy calibration: Unifying shear and redshift calibration with the SKiLLS multi-band image simulations

S. S. Li et al

A&A

2022

https://doi.org/10.1051/0004-6361/202245210

Astronomy and Astrophysics

High-level ab initio quartic force fields and spectroscopic characterization of C2N

C. M. R. Rocha and H. Linnartz

Phys. Chem. Chem. Phys,

2021

https://doi.org/10.1039/D1CP03505C

Astronomy and Astrophysics

Effects of stellar density on the photoevaporation of circumstellar discs

F. Concha-Ramirez et al.

MNRAS

2021

https://doi.org/10.1093/mnras/staa3669

Astronomy and Astrophysics

Lucky planets: how circum-binary planets survive the supernova in one of the inner-binary components

F. Fagginger Auer & S. Portegies Zwart

eprint arXiv:2101.08033, Submitted to SciPost Astronomy

2021

https://ui.adsabs.harvard.edu/link_gateway/2021arXiv210108033F/arxiv:2101.08033

Astronomy and Astrophysics

Trimodal structure of Hercules stream explained by originating from bar resonances

T. Asano et al.

MNRAS

2020

https://doi.org/10.1093/mnras/staa2849

Astronomy and Astrophysics

Oort cloud Ecology II: Extra-solar Oort clouds and the origin of asteroidal interlopers

S. Portegies Zwart

eprint arXiv:2011.08257, accepted for publication by A&A

2020

https://ui.adsabs.harvard.edu/link_gateway/2020arXiv201108257P/arxiv:2011.08257

Astronomy and Astrophysics

The ecological impact of high-performance computing in astrophysics

S. Portegies Zwart

Nature Astronomy

2020

https://doi.org/10.1038/s41550-020-1208-y

Biochemistry

 

 

 

 

 

Biochemistry

Menaquinone-specific turnover by Mycobacterium tuberculosis cytochrome bd is redox regulated by the Q-loop disulfide bond

T. T. van der Velden et al.

Journal of Biological Chemistry

2025

https://www.jbc.org/article/S0021-9258(24)02596-1/fulltext

Biochemistry

Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending

Y. Hu et al.

Nucleic Acids Research

2024

https://doi.org/10.1093/nar/gkae485

Biochemistry

Histones and histone variant families in prokaryotes

Schwab, S., Hu, Y., van Erp, B. et al.

Nature Communication

2024

https://doi.org/10.1038/s41467-024-52337-y

Biology

 

 

 

 

 

Biology

Tokay gecko tail regeneration involves temporally collinear expression of HOXC genes and early expression of satellite cell markers

L., Benes, V., Blom, S. et al.,

BMC Biol

2025

https://doi.org/10.1186/s12915-024-02111-9

Biology

How cells align to structured collagen fibrils: a hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions

K. A. E. Keijzer, E, Tsingos, R. M. H. Merks

Front. Cell Dev. Biol.

2025

https://doi.org/10.3389/fcell.2024.1462277

Biology

A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota

D.M. Versluis et al.

mSystems

2022

https://doi.org/10.1128/msystems.00446-22

Biophyiscs

 

 

 

 

 

Biophysics

Hybrid cellular Potts and bead-spring modeling of cells in fibrous extracellular matrix

E. Tsingos et al.

Biophysical Journal

2023

https://doi.org/10.1016/j.bpj.2023.05.013

Computer Sciences

 

 

 

 

 

Computer Sciences

Curriculum reinforcement learning for quantum architecture search under hardware errors

Y J. Patel et al.

ICLR 2024

2024

https://openreview.net/forum?id=rINBD8jPoP

Computer Sciences

Better Distractions: Transformer-based Distractor Generation and Multiple Choice Question Filtering

J. Offerijns, V. Verberne, T. Verhoe

eprint arXiv:2010.09598

2020

https://arxiv.org/abs/2010.09598

Ecology

 

 

 

 

 

Ecology

MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences

L. Romeijn, A. Bernatavicius, D. Vu

Molecular Ecology Resources

2024

https://doi.org/10.1111/1755-0998.14006

Ecology

Improving estimations of life history parameters of small animals in mesocosm experiments: A case study on mosquitoes

M. Dellar, B.P. Sam, D. Holmes

Methods in Ecology and Evolution

2022

https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13814

Humanities

 

 

 

 

 

Humanities

Processing syntactic violations in the non-native language: different behavioural and neural correlates as a function of typological similarity?

S. Von Grebmer Zu Wolfsthurn, L. Pablos, N. O. Schiller

 

Cambridge University Press

2025

https://www.cambridge.org/core/journals/bilingualism-language-and-cognition/article/processing-syntactic-violations-in-the-nonnative-language-different-behavioural-and-neural-correlates-as-a-function-of-typological-similarity/0B0DE7F1BAFC4B016F41D9CFB9D26C77?utm_campaign=shareaholic&utm_medium=copy_link&utm_source=bookmark

Genomics

 

 

 

 

 

Genomics

Phylogenomics resolves the puzzling phylogeny of banded newts (genus Ommatotriton)

K. Kalaentzis et al.

Molecular Phylogenetics

2025

https://doi.org/10.1016/j.ympev.2024.108237

Medical Science

 

 

 

 

 

Medical Science

Towards robust and accurate estimates of the incubation time distribution, with focus on upper tail probabilities and SARS-CoV-2 infection

V.H. Arnzten, et al.

Statistics in Medicine

2023

https://doi.org/10.1002/sim.9726

Physics

 

 

 

 

 

Physics

Loop corrections for hard spheres in Hamming space

A. Ramezanpour, S. Moghimi-Araghi

Journal of Statistical Mechanics: Theory and Experiment

2025

https://doi.org/10.1088/1742-5468/adba42

Physics

Preparing low-variance states using a distributed quantum algorithm

X. Liu, B. F. Schiffer, J. Tura

arXiv:2501.13097

2025

https://doi.org/10.48550/arXiv.2501.13097

Social Sciences

 

 

 

 

 

Social Sciences

Common multi-day rhythms in smartphone behavior

E. Ceolini, & A. Ghosh

npj Digital Medicine

2023

https://doi.org/10.1038/s41746-023-00799-7

Leiden researchers and their use of HPC

News articles featuring ALICE

  • Hazardous Object Identifier: Supercomputer Helps to Identify Dangerous Asteroids, Oliver Peckman, HPC Wire, 04 March 2020, link

  • Elf reuzestenen op ramkoers met de aarde?, Annelies Bes, 13 February 2020, Kijk Magazine, link

  • Leidse sterrenkundigen ontdekken aardscheerders-in-spé, NOVA, 12 February 2020, link

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