Publications featuring ALICE
- 1 Articles with acknowledgements to the use of ALICE
- 1.1 Archeology
- 1.2 Astronomy and Astrophysics
- 1.3 Biochemistry
- 1.4 Biology
- 1.5 Biophyiscs
- 1.6 Computer Sciences
- 1.7 Ecology
- 1.8 Humanities
- 1.9 Genomics
- 1.10 Medical Science
- 1.11 Physics
- 1.12 Social Sciences
- 2 Leiden researchers and their use of HPC
- 3 News articles featuring ALICE
Articles with acknowledgements to the use of ALICE
Please acknowledge the use of ALICE in your publications as outlined here: Acknowledging ALICE
Category | Title | Author | Journal | Year | Link |
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Archeology |
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Archeology | On the ecological impact of prehistoric hunter-gatherers in Europe: Early Holocene (Mesolithic) and Last Interglacial (Neanderthal) foragers compared | A. Nikulina et al. | PLOS One | 2025 | |
Archeology | Hunter-gatherer impact on European interglacial vegetation: A modelling approach | A. Nikulina et al. | Quaternary Science Reviews | 2024 | |
Astronomy and Astrophysics |
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| Radiation magnetohydrodynamics simulations of Population III star formation during the Epoch of Reionization | Veenen, van L et al. | Astronomy & Astrophysics | 2025 | |
Astronomy and Astrophysics | Hints of nonminimally coupled gravity in DESI 2024 baryon acoustic oscillation measurements. | Ye, G., Martinelli, M., Hu, B., & Silvestri, A. | Physical Review Letters | 2025 | doi:10.1103/PhysRevLett.134.181002 |
Astronomy and Astrophysics | Stability of a cluster-disrupted mean-motion resonance (chain) in HR 8799 and PDS 70 | B. Maas et al. | A&A | 2025 | |
Astronomy and Astrophysics | Reducing false positives in strong lens detection through effective augmentation and ensemble learning | S. Rezaei et al. | MNRAS | 2025 | |
Astronomy and Astrophysics | Rocky planet formation in compact disks around M dwarfs | M. Sanchez et al. | A&A | 2024 | |
Astronomy and Astrophysics | KiDS-Legacy calibration: Unifying shear and redshift calibration with the SKiLLS multi-band image simulations | S. S. Li et al | A&A | 2022 | |
Astronomy and Astrophysics | High-level ab initio quartic force fields and spectroscopic characterization of C2N− | C. M. R. Rocha and H. Linnartz | Phys. Chem. Chem. Phys, | 2021 | https://doi.org/10.1039/D1CP03505C |
Astronomy and Astrophysics | Effects of stellar density on the photoevaporation of circumstellar discs | F. Concha-Ramirez et al. | MNRAS | 2021 | |
Astronomy and Astrophysics | Lucky planets: how circum-binary planets survive the supernova in one of the inner-binary components | F. Fagginger Auer & S. Portegies Zwart | eprint arXiv:2101.08033, Submitted to SciPost Astronomy | 2021 | https://ui.adsabs.harvard.edu/link_gateway/2021arXiv210108033F/arxiv:2101.08033 |
Astronomy and Astrophysics | Trimodal structure of Hercules stream explained by originating from bar resonances | T. Asano et al. | MNRAS | 2020 | |
Astronomy and Astrophysics | Oort cloud Ecology II: Extra-solar Oort clouds and the origin of asteroidal interlopers | S. Portegies Zwart | eprint arXiv:2011.08257, accepted for publication by A&A | 2020 | https://ui.adsabs.harvard.edu/link_gateway/2020arXiv201108257P/arxiv:2011.08257 |
Astronomy and Astrophysics | The ecological impact of high-performance computing in astrophysics | S. Portegies Zwart | Nature Astronomy | 2020 | |
Biochemistry |
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Biochemistry | Menaquinone-specific turnover by Mycobacterium tuberculosis cytochrome bd is redox regulated by the Q-loop disulfide bond | T. T. van der Velden et al. | Journal of Biological Chemistry | 2025 | |
Biochemistry | Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending | Y. Hu et al. | Nucleic Acids Research | 2024 | |
Biochemistry | Histones and histone variant families in prokaryotes | Schwab, S., Hu, Y., van Erp, B. et al. | Nature Communication | 2024 | |
Biology |
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| Essential and dispensable domains of DivIVA for walled growth in filamentous Actinomycetota | Lubbers, M et al. | Open Biology | 2025 | |
Biology | Tokay gecko tail regeneration involves temporally collinear expression of HOXC genes and early expression of satellite cell markers | L., Benes, V., Blom, S. et al., | BMC Biol | 2025 | |
Biology | How cells align to structured collagen fibrils: a hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions | K. A. E. Keijzer, E, Tsingos, R. M. H. Merks | Front. Cell Dev. Biol. | 2025 | |
| Identification, characterization and classification of prokaryotic nucleoid-associated proteins | Schwab, S and Dame, RT | mmi | 2024 | |
Biology | A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota | D.M. Versluis et al. | mSystems | 2022 | |
Biophyiscs |
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Biophysics | Hybrid cellular Potts and bead-spring modeling of cells in fibrous extracellular matrix | E. Tsingos et al. | Biophysical Journal | 2023 | |
Computer Sciences |
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| MECHBench: A Set of Black-Box Optimization Benchmarks originated from Structural Mechanics | Iván Olarte Rodríguez, et al. | cs.NE | 2025 | |
| A Benchmark Study of Deep Reinforcement Learning Algorithms for the Container Stowage Planning Problem | Huang Y, et al. | cs.AI | 2025 | |
Computer Sciences | It’s a Kind of Magic: A Novel Conditional GAN Framework for Efficient Profiling Side-Channel Analysis | S. Karayalcin | ASIACRYPT 2024 | 2024 | It’s a Kind of Magic: A Novel Conditional GAN Framework for Efficient Profiling Side-Channel Analysis | SpringerLink |
Computer Sciences | Curriculum reinforcement learning for quantum architecture search under hardware errors | Y J. Patel et al. | ICLR 2024 | 2024 | |
Computer Sciences | Better Distractions: Transformer-based Distractor Generation and Multiple Choice Question Filtering | J. Offerijns, V. Verberne, T. Verhoe | eprint arXiv:2010.09598 | 2020 | |
Ecology |
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Ecology | NewtCap: An Efficient Target Capture Approach to Boost Genomic Studies in Salamandridae (True Salamanders and Newts) | Manon Chantal de Visser, et al | Ecology and Evolution | 2025 | |
Ecology | MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences | L. Romeijn, A. Bernatavicius, D. Vu | Molecular Ecology Resources | 2024 | |
Ecology | Improving estimations of life history parameters of small animals in mesocosm experiments: A case study on mosquitoes | M. Dellar, B.P. Sam, D. Holmes | Methods in Ecology and Evolution | 2022 | https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13814 |
Humanities |
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Humanities | Processing syntactic violations in the non-native language: different behavioural and neural correlates as a function of typological similarity? | S. Von Grebmer Zu Wolfsthurn, L. Pablos, N. O. Schiller
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Genomics |
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Genomics | Phylogenomics resolves the puzzling phylogeny of banded newts (genus Ommatotriton) | K. Kalaentzis et al. | Molecular Phylogenetics | 2025 | |
Medical Science |
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Medical Science | Dynamic prediction of survival using multivariate functional principal component analysis: A strict landmarking approach | D. Gomon et al. | Statistical Methods in Medical Research | 2024 | |
Medical Science | Towards robust and accurate estimates of the incubation time distribution, with focus on upper tail probabilities and SARS-CoV-2 infection | V.H. Arnzten, et al. | Statistics in Medicine | 2023 | |
Physics |
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| Optimizing quantum violation for multipartite facet Bell inequalities | Jin-Fu Chen, et al. | quant-ph | 2025 | |
| A Josephson wormhole in coupled superconducting Yukawa-SYK metals | Aravindh S. Shankar, Jasper Steenbergen, Stephan Plugge, and Koenraad Schalm | arXiv | 2025 | |
Physics | Strongly interacting electrons in Sachdev-Ye Kitaev models and twisted bilayer graphene | Shankar, A.S. | PhD thesis | 2025 | https://scholarlypublications.universiteitleiden.nl/handle/1887/4173115 |
Physics | Loop corrections for hard spheres in Hamming space | A. Ramezanpour, S. Moghimi-Araghi | Journal of Statistical Mechanics: Theory and Experiment | 2025 | |
Physics | Preparing low-variance states using a distributed quantum algorithm | X. Liu, B. F. Schiffer, J. Tura | arXiv:2501.13097 | 2025 | |
Social Sciences |
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Social Sciences | Common multi-day rhythms in smartphone behavior | E. Ceolini, & A. Ghosh | npj Digital Medicine | 2023 |