Publications featuring ALICE

Articles with acknowledgements to the use of ALICE

Please acknowledge the use of ALICE in your publications as outlined here:

Archeology

Astronomy and Astrophysics

Biochemistry

  • Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending, Y. Hu et al., Nucleic Acids Research (June 2024), DOI:

  • Schwab, S., Hu, Y., van Erp, B. et al. Histones and histone variant families in prokaryotes. Nat Commun 15, 7950 (2024).

Biology

  • A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota, D.M. Versluis et al., mSystems (September 2022), DOI: https://doi.org/10.1128/msystems.00446-22

Biophyiscs

Computer Sciences

  • Curriculum reinforcement learning for quantum architecture search under hardware errors, Yash J. Patel, Akash Kundu, Mateusz Ostaszewski, Xavier Bonet-Monroig, Vedran Dunjko and Onur Danaci, ICLR 2024 Conference (January 2024),

  • Better Distractions: Transformer-based Distractor Generation and Multiple Choice Question Filtering, J. Offerijns, V. Verberne, T. Verhoe, eprint arXiv:2010.09598, (October 2020),

Ecology

  • MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences, L. Romeijn, A. Bernatavicius, D. Vu, Molecular Ecology Resources, August 2024, https://doi.org/10.1111/1755-0998.14006

  • Improving estimations of life history parameters of small animals in mesocosm experiments: A case study on mosquitoes, M. Dellar, B.P. Sam, D. Holmes, Methods in Ecology and Evolution, (February 2022),

Medical Science

  • Towards robust and accurate estimates of the incubation time distribution, with focus on upper tail probabilities and SARS-CoV-2 infection, V.H. Arnzten, et al., Statistics in Medicine, (April 2023), https://doi.org/10.1002/sim.9726

Social Sciences

Leiden researchers and their use of HPC

News articles featuring ALICE

  • Hazardous Object Identifier: Supercomputer Helps to Identify Dangerous Asteroids, Oliver Peckman, HPC Wire, 04 March 2020, link

  • Elf reuzestenen op ramkoers met de aarde?, Annelies Bes, 13 February 2020, Kijk Magazine, link

  • Leidse sterrenkundigen ontdekken aardscheerders-in-spé, NOVA, 12 February 2020, link