Tutorials
Here you can find tutorials for running jobs or working with software on the ALICE and SHARK HPC clusters.
Your first job
- Your first bash job
- Your first Python job
- Your first R job
- Your first GPU job
- Your first MPI job
- Your first MATLAB job
Running Jupyter notebooks in an interactive session
More on using R
Using FSL on ALICE
Tensorflow example
Setting up VSCode to work on the cluster
Instructions for specific software and packages
- Activity Browser and Brightway
- Alphafold
- Data Transfer to YODA or LDS from ALICE (irods)
- funannotate
- graph-tool
- Gromacs
- HALFpipe
- Matlab
- More on Hugging Face
- MRI_reface: face-off of MRI research sequences
- networkx
- ollama
- Pytorch
- Transcription of audio files with faster-whisper